YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PDI22_ORYSJ
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIPRISPRK TLPLFAALAL ALAWAFAAPA FADGDDVVAL TESTFEKEVG QDRGALVEFY  60
   61 APWCGHCKKL APEYEKLGAS FKKAKSVFIA KVDCDEHKSV CSKYGVSGYP TIQWFPKGSL 120
  121 EPKKYEGQRS AEALAEFVNT EGGTNVKLAT IPSSVVVLGP DNFDSIVLDE NKDILVEFYA 180
  181 PWCGHCKHLA PIYEKLASVY KLDDGVVIAN LDADKHKDLA EKYGVSGYPT LKFFPKGNKA 240
  241 GEDYDGGREL DDFVKFINEK CGTSRDTKGQ LTSEAGRIAS LDALAKEFLG AANDKRKEIL 300
  301 SNMEEEVVKL SGSAAKHGKV YIAIAKKILD KGHDYTKKET ERLERMLEKS ISPSKADEFI 360
  361 IKKNVLSTFS S

Type	Start	End	Confidence
Signal Peptide	1	32	0.97
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	371	0.99