YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB32G_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	531	0.96
Transmembrane Helix	532	552	0.94
Cytoplasmic	553	561	0.78
Transmembrane Helix	562	583	0.86
Non-Cytoplasmic	584	613	0.80
Transmembrane Helix	614	636	0.89
Cytoplasmic	637	647	0.76
Transmembrane Helix	648	667	0.90
Non-Cytoplasmic	668	676	0.69
Transmembrane Helix	677	696	0.94
Cytoplasmic	697	756	0.92
Transmembrane Helix	757	779	0.92
Non-Cytoplasmic	780	1196	0.97
Transmembrane Helix	1197	1219	0.89
Cytoplasmic	1220	1228	0.86
Transmembrane Helix	1229	1246	0.87
Non-Cytoplasmic	1247	1282	0.83
Transmembrane Helix	1283	1303	0.87
Cytoplasmic	1304	1311	0.82
Transmembrane Helix	1312	1334	0.91
Non-Cytoplasmic	1335	1341	0.78
Transmembrane Helix	1342	1362	0.93
Cytoplasmic	1363	1369	0.90
Transmembrane Helix	1370	1389	0.92
Non-Cytoplasmic	1390	1420	0.93
Transmembrane Helix	1421	1443	0.92
Cytoplasmic	1444	1451	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAREIHKIAS LRRESSLWRR GDDGVYFSRS STGASSSRFR DEEDDEEALR WAALERLPTR  60
   61 DRVRRGILLQ AAEGNGEKVE VDVGRMGARE SRALIARLIR AADDDHALFL LKLKDRMDRV 120
  121 GIDYPTIEVR FEKLEVEAEV HVGNRGLPTL LNSIINTVQA IGNALHISPT RKQPMTVLHD 180
  181 VSGIIKPRRM TLLLGPPGSG KTTLLLALAG KLEDNLKVSG KVTYNGHGMD EFVPQRTAAY 240
  241 ISQHDLHIGE MTVRETLAFS ARCQGVGSRY DMLTELSRRE KAENIKPDQD IDVYMKASAI 300
  301 GGQESSVVTE YILKILGLDI CADTVVGNDM LRGVSGGQRK RVTTGEMLVG PARALFMDEI 360
  361 STGLDSSTTY QIVNSIGQTI RILGGTAVIS LLQPAPETYN LFDDIILLSD GQIVYQGARE 420
  421 HVLEFFELMG FRCPQRKGVA DFLQEVTSKK DQEQYWYRND IPYSFVPVKQ FADAFRSFHV 480
  481 GQSIQNELSE PFDRSRSHPA SLATSKFGVS WMALLKANID RELLLMKRNS FVYIFKAANL 540
  541 TLTAFLVMTT FLRTKMRHDT TYGTIYMGAL YFALDTIMFN GFAELGMTVM KLPVFFKQRD 600
  601 LLFFPAWTYT IPSWILQIPV TFFEVGVYVF TTYYVVGFDP NVSRFFKQYL LLVALNQMSS 660
  661 SLFRFIAGIG RDMVVSQTFG PLSLLAFTAL GGFILARPDV KKWWIWGYWI SPLSYAQNAI 720
  721 STNEFLGRSW NKSFPGQNDT VGISILKSRG IFTEAKWYWI GFGALIGYTL LFNLLYTVAL 780
  781 SFLKPLGDSY PSVPEDALKE KRANQTGEIL DSCEEKKSRK KEQSQSVNQK HWNNTAESSQ 840
  841 IRQGILPFAQ LSLSFNDIKY SVDMPEAMTA QGVTEERLLL LKGVSGSFRP GVLTALMGVS 900
  901 GAGKTTLMDV LAGRKTGGYI EGDITISGYP KKQETFARIS GYCEQNDIHS PHVTVYESLV 960
  961 FSAWMRLPSE VDSETRKMFI EEVMELVELT SLRGALVGLP GVNGLSTEQR KRLTVAVELV1020
 1021 ANPSIIFMDE PTSGLDARAA AIVMRTVRKT VDTGRTVVCT IHQPSIDIFE AFDELFLMKR1080
 1081 GGEEIYVGPL GQNSSKLIEY FEGIEGISKI KDGYNPATWM LEVTSTTQEE MLGIDFSEIY1140
 1141 KRSELYQRNK ELIQDLSTPT PGSTDLHFPT QYSRSFFTQC IACLWKHKLS YWRNPSYTAV1200
 1201 RLLFTIIIAL LFGTMFWDLG RKTKKEQDLF NAVGSMYAAV LYIGIQNSGC VQPVVVVERT1260
 1261 VFYRERAAGM YSGFPYAFGQ VAIELPYILV QTLVYGVLVY SMIGFEWTVA KFIWYLFFMY1320
 1321 FTLLYFTFFG MMAVGLTPNE SIAAIISPAI YNAWNLFSGY LIPRPKIPVW WRWYCWICPV1380
 1381 AWTLYGLVAS QFGNIQTKLD GKDQTVAQFI TEYYGFHHDL LWLVAVVHVV FTVMFAFLFS1440
 1441 FAIMKFNFQR R