YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24106630, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPAFY VPMSNATGVV RSPYEYPQYY LVAPWAYGLL AAYMFFLIIT GFPVNFLTLY  60
   61 VTIEHKKLRT PLNYILLNLA IADLFMVFGG FTTTMYTSLH GYFVFGRLGC NLEGFFATLG 120
  121 GEMGLWSLVV LAIERWMVVC KPVSNFRFGE NHAIMGVAFT WVMACSCAVP PLVGWSRYIP 180
  181 EGMQCSCGVD YYTRTPGVNN ESFVIYMFIV HFFIPLIVIF FCYGRLVCTV KEAAAQQQES 240
  241 ETTQRAEREV TRMVIIMVIA FLICWVPYAG VAWYIFTHQG SEFGPVFMTL PAFFAKTSAV 300
  301 YNPCIYICMN KQFRHCMITT LCCGKNPFEE EEGASTTASK TEASSVSSSS VSPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.92
Transmembrane Helix	39	61	0.90
Cytoplasmic	62	73	0.86
Transmembrane Helix	74	96	0.90
Non-Cytoplasmic	97	113	0.87
Transmembrane Helix	114	133	0.90
Cytoplasmic	134	152	0.81
Transmembrane Helix	153	174	0.93
Non-Cytoplasmic	175	203	0.96
Transmembrane Helix	204	227	0.87
Cytoplasmic	228	252	0.93
Transmembrane Helix	253	276	0.89
Non-Cytoplasmic	277	286	0.85
Transmembrane Helix	287	308	0.74
Cytoplasmic	309	354	0.83