YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDSN_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSQAPRMG SVGGHGLMAL LMAGLILPGI LAKSIGTLSD PCKDPTRITS PNDPCLIGKT  60
   61 GSNSISSQGG SSSFSSQGGS SSFSSHGGSS SSQGSSSGSL IYKPGTGYSQ SSYSYGSGGS 120
  121 RPGGSGSQTG SSSSQTGSSS SQSGSSGSQS GSSGSQSGSS GSQSGSSGSQ SGSSGSQSGS 180
  181 SGSQSGRWVS SSSQWVSSSS QSGSSGSSRD RPGSGSALPT GDKTSGMSQS GGSSTSQSSS 240
  241 SNLRPCSSNV PDSPCSGGPV ITHSGPYISG THTVSGGQRP VVVVVEHHGS AGPGFQGMPC 300
  301 SNGGPAGKPC PPITSVQKPY GGYEVVGGSA NSYLVPGMTY SGGKIYPVGY FTKDNPIRGS 360
  361 PGAPSFAAGP PVSEGKYFSS NPIIPSRGSS SSSGYPVGVV FQPVGSGGVQ PCGTGSVSSK 420
  421 GPCSGTRIQI TSSSSSTSYH PCSGGSSQGP CSSPGTGSIS GGSSSLSSGK IVLQPCGSKS 480
  481 TSSGYPCLSV PSSPLNGGLN GSPQPVPSVG VKLCGLNSPG RVPCRSIRNI LTQVKPLGPQ 540
  541 LMDPKVSLPQ GEPQGEPLEK S

Type	Start	End	Confidence
Signal Peptide	1	32	0.71
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	561	0.99