YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27882217, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQNNQDYY RSVSSESTTY MMVPANSRGR DSPSKLWIAM VVIVVVVLQI ASTTGLFVYL  60
   61 NMSLSQVKSQ GVTEELRCLG LLNVLGKDQD IPEDLAQLFG EPCMKLAEGI KAYISKVTDS 120
  121 IISKQTLHAA RTRTHSYNTT GSKFMTTVMQ RPSAHLTLSS ASDNSRPQSD MHQPQFDLHQ 180
  181 SCRHPVHTWA NKSFGAHLYN MTLTNGRLRV PQDGRYYLYS QVYFRYPSPS DSDQSSVSHQ 240
  241 LVQCIYKKTS YLNPIQLLKG VGTKCWAPDA EYALHSVYQG GLFELRAGDE VFVSVSSPTM 300
  301 VYGEDSSSYF GAFRLDL

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	60	0.92
Non-Cytoplasmic	61	317	0.98