YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197247028, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESVGCCDS VSQCFFDYYT SKILIIRSKK VGTLNRFTQA LVIAYVIGYV CVYNKGYQDT  60
   61 DTVLSSVTTK VKGIALTNTS ELGERIWDVA DYIIPPQVVR RLDEEEEDGS FFVLTNMIIT 120
  121 TNQTQSKCAE NPTPASTCTS HRDCKRGFND ARGDGVRTGR CVSYSASVKT CEVLSWCPLE 180
  181 KIVDPPNPPL LADAENFTVL IKNNIRYPKF NFNKRNILPN INSSYLTHCV FSRKTDPDCP 240
  241 IFRLGDIVGE AEEDFQIMAV HGGVMGVQIR WDCDLDMPQS WCVPRYTFRR LDNKDPDNNV 300
  301 APGYNFRFAK YYKNSDGTET RTLIKGYGIC FDVMVFGQAG KFNIIPTLLN IGAGLALLGL 360
  361 VNVICDWIVL TFMKRKQHYK EQKYTYVDDF GLLHNEDK

Type	Start	End	Confidence
Non-Cytoplasmic	1	350	0.81
Transmembrane Helix	351	370	0.90
Cytoplasmic	371	398	0.88