YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S29A2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.96
Transmembrane Helix	11	33	0.90
Non-Cytoplasmic	34	68	0.94
Transmembrane Helix	69	89	0.91
Cytoplasmic	90	97	0.79
Transmembrane Helix	98	116	0.96
Non-Cytoplasmic	117	124	0.76
Transmembrane Helix	125	148	0.84
Cytoplasmic	149	159	0.77
Transmembrane Helix	160	182	0.90
Non-Cytoplasmic	183	190	0.83
Transmembrane Helix	191	212	0.93
Cytoplasmic	213	287	0.98
Transmembrane Helix	288	311	0.90
Non-Cytoplasmic	312	322	0.84
Transmembrane Helix	323	343	0.87
Cytoplasmic	344	359	0.88
Transmembrane Helix	360	383	0.82
Non-Cytoplasmic	384	394	0.82
Transmembrane Helix	395	417	0.90
Cytoplasmic	418	428	0.85
Transmembrane Helix	429	452	0.90
Non-Cytoplasmic	453	456	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGNAPRDS YHLVGISFFI LGLGTLLPWN FFITAIPYFQ GRLAGTNSSA ETMGTNHTSP  60
   61 TDTFNFNNWV TLLSQLPLLL FTLLNSFLYQ CIPESVRILG SLLAILLLFA LTAALVKVDL 120
  121 SPGLFFSVTM ASVWFINSFC AVLQGSLFGQ LGTMPSTYST LFLSGQGLAG IFAALAMLMS 180
  181 LASGVDAQTS ALGYFITPCV GILLSIVCYL SLPHLKFARY YLTEKLSQAP TQELETKAEL 240
  241 LQADEKNGVP ISPQQASPTL DLDPEKEPEP EEPQKPGKPS VFVVFRKIWL TALCLVLVFT 300
  301 VTLSVFPAIT AMVTTSSNSP GKWGLFFNPI CCFLLFNVMD WLGRSLTSYF LWPDEDSQQL 360
  361 LPLLVCLRFL FVPLFMLCHV PQHARLPIIF RQDAYFITFM LLFAVSNGYL VSLTMCLAPR 420
  421 QVLPHEREVA GALMTFFLAL GLSCGASLSF LFKALL