YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113534153, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGNFGSEER ILWPASVLAG IAMCAAVYDI TQKVSSHCFK GYDNISPMKK VEWNNRGFST  60
   61 FHALVAAVVS FYLVVISDLF HSNIIIDRNS WLSDAMFGVS IGYFLTDLVM ILWYFPSLGG 120
  121 KEYLLHHGLS MYAICLALLS GKAHMYILMV LFTEATTPFV NLRWYLEVAG KKTHNLYLYN 180
  181 GLALFVGWLV ARVILFIYFF THMYFHFDQV KSIFPLGFYS ILTVPPALAV MNLFWFWKIF 240
  241 KGMLKTLSKR RQQSENGKAE

Type	Start	End	Confidence
Cytoplasmic	1	10	0.74
Transmembrane Helix	11	31	0.83
Non-Cytoplasmic	32	57	0.67
Transmembrane Helix	58	81	0.84
Cytoplasmic	82	94	0.54
Transmembrane Helix	95	115	0.93
Non-Cytoplasmic	116	122	0.61
Transmembrane Helix	123	155	0.66
Cytoplasmic	156	175	0.73
Transmembrane Helix	176	200	0.87
Non-Cytoplasmic	201	215	0.87
Transmembrane Helix	216	237	0.91
Cytoplasmic	238	260	0.91