YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3095038
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDITVKEQEF SNGLIKNSSA FENIKFSNIK NNFKVQKKFQ ILYFILFIFV TGVFFFFLIG  60
   61 NYFFSPNYKV NKIVQNTEHL TIGFKIERPH DKVLKTIVEK NLKNYIKETV KFFQSGYVKQ 120
  121 NYLGSENDVI ELDDVANLMF YGEGEVGDNH QKFMLIFDTG SANLWVPSKK CNSIGCSTKH 180
  181 LYDSSKSKSY EKDGTKVEIT YGSGTVRGFF SKDLVTLGYL SLPYKFIEVT DTDDLEPLYT 240
  241 AAEFDGILGL GWKDLSIGSI DPIVVELKNQ NKIDQALFTF YLPVHDKHSG YLTIGGIEEK 300
  301 FYEGELTYEK LNHDLFWQVD LDVNFGKTSM EKANVIVDSG TSTITAPTSF INKFFKDLNV 360
  361 IKVPFLPFYI TTCNNKDMPT LEFKSANNTY TLEPEYYMEP LLDIDDTLCM LYILPVDIDK 420
  421 NTFILGDPFM RKYFTVFDYD KESIGFAVAK N

Type	Start	End	Confidence
Cytoplasmic	1	40	0.97
Transmembrane Helix	41	63	0.90
Non-Cytoplasmic	64	451	0.99