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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113533608, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLWAAIAA LFVAAAVVVR GAAAADDAQL LEEFRQAVPN QAALKGWSGG DGACRFPGAG  60
   61 CRNGRLTSLS LAGVPLNAEF RAVAATLLQL GSVEVLSLRG ANVSGALSAA GGARCGSKLQ 120
  121 ALDLSGNAAL RGSVADVAAL ASACGGLKTL NLSGDAVGAA KVGGGGGPGF AGLDSLDLSN 180
  181 NKITDDSDLR WMVDAGVGAV RWLDLALNRI SGVPEFTNCS GLQYLDLSGN LIVGEVPGGA 240
  241 LSDCRGLKVL NLSFNHLAGV FPPDIAGLTS LNALNLSNNN FSGELPGEAF AKLQQLTALS 300
  301 LSFNHFNGSI PDTVASLPEL QQLDLSSNTF SGTIPSSLCQ DPNSKLHLLY LQNNYLTGGI 360
  361 PDAVSNCTSL VSLDLSLNYI NGSIPASLGD LGNLQDLILW QNELEGEIPA SLSRIQGLEH 420
  421 LILDYNGLTG SIPPELAKCT KLNWISLASN RLSGPIPSWL GKLSYLAILK LSNNSFSGPI 480
  481 PPELGDCQSL VWLDLNSNQL NGSIPKELAK QSGKMNVGLI VGRPYVYLRN DELSSECRGK 540
  541 GSLLEFTSIR PDDLSRMPSK KLCNFTRMYV GSTEYTFNKN GSMIFLDLSY NQLDSAIPGE 600
  601 LGDMFYLMIM NLGHNLLSGT IPSRLAEAKK LAVLDLSYNQ LEGPIPNSFS ALSLSEINLS 660
  661 NNQLNGTIPE LGSLATFPKS QYENNTGLCG FPLPPCDHSS PRSSNDHQSH RRQASMASSI 720
  721 AMGLLFSLFC IIVIIIAIGS KRRRLKNEEA STSRDIYIDS RSHSATMNSD WRQNLSGTNL 780
  781 LSINLAAFEK PLQNLTLADL VEATNGFHIA CQIGSGGFGD VYKAQLKDGK VVAIKKLIHV 840
  841 SGQGDREFTA EMETIGKIKH RNLVPLLGYC KAGEERLLVY DYMKFGSLED VLHDRKKIGK 900
  901 KLNWEARRKI AVGAARGLAF LHHNCIPHII HRDMKSSNVL IDEQLEARVS DFGMARLMSV 960
  961 VDTHLSVSTL AGTPGYVPPE YYQSFRCTTK GDVYSYGVVL LELLTGKPPT DSADFGEDNN1020
 1021 LVGWVKQHTK LKITDVFDPE LLKEDPSVEL ELLEHLKIAC ACLDDRPSRR PTMLKVMAMF1080
 1081 KEIQAGSTVD SKTSSAAAGS IDEGGYGVLD MPLREAKEEK D

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle