YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SWT6A_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISPDAARNV VGIIGNVISF GLFLAPVPTF WRICKRKDVE EFKADPYLAT LLNCMLWVFY  60
   61 GIPVVHPNSI LVVTINGIGL LVEGTYLLIF FLYSPNKKRL RMCAVLGVEL VFMLAVILGV 120
  121 LLGAHTHEKR SMIVGILCVF FGSIMYFSPL TIMGKVIKTK SVEYMPFFLS LVCFLNGVCW 180
  181 TAYALIRFDI YVTIPNGLGA LFGAIQLILY ACYYRTTPKK TKAAKDVEMP SVVVSGTGAA 240
  241 AAAGGGNTGG GSVSVTVER

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.81
Transmembrane Helix	12	31	0.92
Cytoplasmic	32	45	0.80
Transmembrane Helix	46	64	0.91
Non-Cytoplasmic	65	70	0.77
Transmembrane Helix	71	93	0.92
Cytoplasmic	94	102	0.87
Transmembrane Helix	103	124	0.94
Non-Cytoplasmic	125	131	0.82
Transmembrane Helix	132	153	0.93
Cytoplasmic	154	163	0.88
Transmembrane Helix	164	186	0.91
Non-Cytoplasmic	187	191	0.87
Transmembrane Helix	192	214	0.89
Cytoplasmic	215	231	0.87
Transmembrane Helix	232	251	0.57
Non-Cytoplasmic	252	259	0.55