YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GRF6_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLGGGVGVV MAAVDGGGGG ELGGGGLLGS RLMKHGRGNA GDQEHEWRPP AKQARGGDAS  60
   61 SAAAAVAAAA AVSEAVKVAA PFLLGASCSP GHGGEQMLSF SSSASSCSSG GGGAAVAAAA 120
  121 AAGGAMPLYY GTPASCSGLS SVSLSSSMQG AMARVRGPFT PSQWIELEHQ ALIYKYLAAN 180
  181 SPVPHSLLIP IRRSLTSPYS PAYFGSSTLG WGSFQLGYSG SADPEPGRCR RTDGKKWRCS 240
  241 RDAVADQKYC ERHMNRGRHR SRKHVEGQPG HAAKAMPAAV AAAAASATQP SAPAAHSGGA 300
  301 VAGLAINHQH QQMKNYAANT ANPCSLQYSR DLANKHNESE QVQDSDSLSM LTSISTRNTG 360
  361 SLFPFSKQHN PFEVSNSRPD FGLVSPDSLM SSPHSSLENV NLLTSQSLNE QQSSVSLQHF 420
  421 VDWPRTPAQG ALAWPDAEDM QAQRSQLSIS APMASSDLSS ASTSPIHEKL MLSPLKLSRE 480
  481 YSPIGLGFAA NRDEVNQGEA NWMPMFRDSL MGGPLGEVLT KNNNMEARNC LSESLNLLND 540
  541 GWDSSSGFDS SPVGVLQKTT FGSVSSSTGS SPRLENHSVY DGNSNLRDDL GSVVVNHPSI 600
  601 RLV

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.57
Transmembrane Helix	8	28	0.45
Cytoplasmic	29	105	0.61
Transmembrane Helix	106	131	0.64
Non-Cytoplasmic	132	603	0.84