YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125587706, gi...
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLRSATRQL SFELLGEGGL AAADDADDDL SPRSFPDTTS DGQRRRRRRS KRKRGLRSPP  60
   61 IEEEEKEGTP RRGGVVGVSD LVSVSVVERE SSDAERSAAS CVTYVGVGVE LRQRSVSGSG 120
  121 RVVSREDATS SCGSSARESA AAAAAVPEAA PAAWRPEANG GGKKLEKEDS LDWERYMKEN 180
  181 GNVLGEVERL DNSPFRYFLG ELYGGNSLRG TISAGNDKKR QRVYNTMFHV PWRCERELIV 240
  241 AGFFVCLDSF LSLLTIMPAR IAITVWRVLK TRQFLRPNAA DLSDYGCFVV LALGVASLQM 300
  301 IAQAITLSTC IIAHNNALLA LLVSNNFAEI KSNVFKRVSK ENLHNLVYYD IIERFHITSF 360
  361 LLFVLAQNIL EAEGPWFDSF LINASLVFMC EVLIDAIKHS FLAKFNEIKP VAYSEFLEDL 420
  421 CKQILNDKTD DRQKDLTFIP LAPACVVIRV LTPVYATLLP AGPFIWRVFW ILLWSVLTYF 480
  481 MLAVFKILVG LVLRCLATWY VNLRLKNKQH VD

Type	Start	End	Confidence
Non-Cytoplasmic	1	237	0.83
Transmembrane Helix	238	263	0.84
Cytoplasmic	264	281	0.78
Transmembrane Helix	282	302	0.82
Non-Cytoplasmic	303	309	0.49
Transmembrane Helix	310	328	0.69
Cytoplasmic	329	350	0.74
Transmembrane Helix	351	370	0.47
Non-Cytoplasmic	371	378	0.48
Transmembrane Helix	379	394	0.59
Cytoplasmic	395	437	0.90
Transmembrane Helix	438	459	0.78
Non-Cytoplasmic	460	475	0.57
Transmembrane Helix	476	497	0.83
Cytoplasmic	498	512	0.88