YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TATA_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMAPVATYP SSSSSSTLAR PPCAAAGRAA AAGRARVAAA GMSSRASSFV TGGAGGLAVA  60
   61 VAARTRAGSG AGSRGGGAMG CKCLFGLGVP ELVVIAGVAA LVFGPKQLPE IGRSIGKTVK 120
  121 SFQQAAKEFE TELKKESDDG GDQPPPPTET AVSDGGEEKE LEASSSKEST

Type	Start	End	Confidence
Cytoplasmic	1	43	0.63
Transmembrane Helix	44	63	0.76
Non-Cytoplasmic	64	82	0.63
Transmembrane Helix	83	104	0.81
Cytoplasmic	105	170	0.62