YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113549454, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSMVSSFW GPVTSTTELC EENYAHSSYI AEFYNTVSNV PCVLLALVGL VNALRQGFEK  60
   61 RFSVLHISNM ILAIGSMIFH ATLQHVLQQS DETPMVWEIL LYLYVLYSPD WHYRSTMPTF 120
  121 LFLYGAAFAV VHFLVRFQVV FKLHYVGLCL LCIPRMYKYY IQTKDMAAKR LAKLWVLTLS 180
  181 LATLCWLFDR MFCKKLSHWY VNPQGHAWWH ILMGFNSYFA NTFLMFCRAQ QRGWEPKITH 240
  241 LFGFLPYVKI QKPQKRE

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.62
Transmembrane Helix	33	54	0.59
Cytoplasmic	55	61	0.91
Transmembrane Helix	62	83	0.89
Non-Cytoplasmic	84	115	0.68
Transmembrane Helix	116	135	0.87
Cytoplasmic	136	170	0.69
Transmembrane Helix	171	192	0.86
Non-Cytoplasmic	193	206	0.91
Transmembrane Helix	207	227	0.94
Cytoplasmic	228	257	0.96