YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DERL2_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAVEEWYR QMPIITRSYL TAAVVTTVGC TLEIISPYHL YLNPKLVVQH YEIWRLVTNF  60
   61 LYFRKMDLDF LFHMFFLARY CKLLEENSFR GRTADFFYML LFGATVLTGI VLIGGMIPYI 120
  121 SETFARILFL SNSLTFMMVY VWSKHNPFIH MSFLGLFTFT AAYLPWVLLG FSILVGSSTW 180
  181 VDLLGMIAGH VYYFLEDVYP RMTGRRPLKT PSFIKALFAD DNVVVARPPN AGLGAGARFG 240
  241 AMGADPQAQ

Type	Start	End	Confidence
Cytoplasmic	1	18	0.88
Transmembrane Helix	19	40	0.83
Non-Cytoplasmic	41	60	0.80
Transmembrane Helix	61	81	0.60
Cytoplasmic	82	95	0.77
Transmembrane Helix	96	117	0.94
Non-Cytoplasmic	118	123	0.69
Transmembrane Helix	124	142	0.91
Cytoplasmic	143	148	0.72
Transmembrane Helix	149	174	0.77
Non-Cytoplasmic	175	177	0.49
Transmembrane Helix	178	195	0.72
Cytoplasmic	196	249	0.78