YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34395199, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	39	0.65
Non-Cytoplasmic	40	59	0.65
Transmembrane Helix	60	82	0.81
Cytoplasmic	83	148	0.84
Transmembrane Helix	149	172	0.89
Non-Cytoplasmic	173	188	0.88
Transmembrane Helix	189	208	0.93
Cytoplasmic	209	217	0.79
Transmembrane Helix	218	240	0.92
Non-Cytoplasmic	241	265	0.92
Transmembrane Helix	266	285	0.91
Cytoplasmic	286	294	0.68
Transmembrane Helix	295	315	0.89
Non-Cytoplasmic	316	337	0.87
Transmembrane Helix	338	363	0.83
Cytoplasmic	364	388	0.87
Transmembrane Helix	389	409	0.91
Non-Cytoplasmic	410	417	0.78
Transmembrane Helix	418	440	0.92
Cytoplasmic	441	446	0.80
Transmembrane Helix	447	467	0.95
Non-Cytoplasmic	468	473	0.86
Transmembrane Helix	474	494	0.93
Cytoplasmic	495	511	0.92
Transmembrane Helix	512	533	0.87
Non-Cytoplasmic	534	781	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAETGPAAP QDQWKSYCRT ISLLAFQSFG VVYGDLSTSP LYVYKSAFSG RLNNYRDETT  60
   61 IFGLFSLIFW TLTLLPLLKY VIIVLNADDN GEGGTFALYS LLCRHAKFSL LPNQQSADEE 120
  121 LSTYYQPGVG GIISSPLKRF LEKHRKLRTC LLLFVLFGAC MVIGDGVFTP AISVLSAISG 180
  181 LKDPGPGGIP DGWVVFIACI VLVGLFALQH RGTHRVAFMF APIVVVWLLS IGVIGLYNII 240
  241 HWNHRIFLAL SPHYVIKFFK MTGKDGWLSL GGVLLAITGT EAMFADLGHF TAASIRLAFV 300
  301 GAIYPCLVLQ YMGQAAFLSR NMSAVEDSFY QSVPRSLFWP VFVIATLAAV VGSQSIISAT 360
  361 FSIVKQCLSL GCFPRVKVVH TSRWIHGQIY IPEINWILMV LCLAVTLGFR DTTVIGNAYG 420
  421 LACIVVMFVT TWLMALVIIF VWQKNILLAL LFVVAFGSIE VVYLSAAVTK VPQGGWAPIV 480
  481 FAFVFMLVMY VWHYGSRRKY LFDLQNKVSM KWILTLGPSL GIVRVPGIGL IYTELVTGVP 540
  541 SIFSHFVTNL PAFHQVLVFV CVKSVPVPFV PEDERYLIGR IGPREYRMYR CIVRYGYKDV 600
  601 QKDDENFENH LVMSIAKFIQ MEAEEAASSG SYESSEGRMA VIHTEDTTGT GLVMRDSNNE 660
  661 ASGTSLTRSS RSETLRSLQS IYEQESGSLS RRRRVRFEIA EEERIDPQVR DELADLLDAK 720
  721 EAGVTYIIGH SYVKARKNSN FLKTFAIDYA YSFLRKNCRG PAVALHIPHI SLVEVGMIYY 780
  781 V