YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113611777, gi...
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGWLKALCY GAGGMAVVGL AALVALQERL VYVPVLPGIA RAYPITPDRL RLIYEDVWLR  60
   61 AADGVRLHSW FIRHSPTCRG PTILFFQENA GNIAHRLDFV RLMMQRLQCN VFMLSYRGYG 120
  121 ESDGYPSQKG IINDAQAALD HLVQRKDIDT SRIVVFGRSL GGAVGAVLAK NNPGKVSALI 180
  181 LENTFTSILD MAGIMLPFLR WFIGGSSSKG PKLLNCVVRS PWSTLDIIAE VKQPIIFLSG 240
  241 LQDELVPPSH MRLLYEKAFE HNKNCRFVDF PNGMHMDTWN SGGDRYWRTI QLFLDQYAPE 300
  301 VQSCNTSCKS EIANDDEAEE

Type	Start	End	Confidence
Cytoplasmic	1	6	0.38
Transmembrane Helix	7	26	0.48
Non-Cytoplasmic	27	320	0.83