YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|215693870, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTPETSREP CPDRILDDVG GAFGMGAVGG SLFHFLKGTY NSPNGERLVG GAQAVRMNAP  60
   61 RVGGSFAVWG GLFSAFDCTM VFMRQKEDPW NSIIAGAATG GFLSMRQGPG AAGRSALMGG 120
  121 MLLALIEGAG LMLNRVLATP PPLPVDDPNL PAVMGGGGGI PGIPQVPVAP PEVASSSGGG 180
  181 SGWFGSLFGK KEEEKKASPS GGKSEMLESF DTPSTPIPTF EYK

Type	Start	End	Confidence
Cytoplasmic	1	18	0.77
Transmembrane Helix	19	36	0.79
Non-Cytoplasmic	37	61	0.66
Transmembrane Helix	62	83	0.81
Cytoplasmic	84	89	0.67
Transmembrane Helix	90	108	0.49
Non-Cytoplasmic	109	110	0.36
Transmembrane Helix	111	134	0.78
Cytoplasmic	135	223	0.57