YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBL1_ORYSA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLLLRMGV SVALLVAFFS SLIPSSEAYD PLDPNGNITI KWDVLQWTPD GYVAVVSLYN  60
   61 YQQYRHIQSP GWKLGWVWAK KEIIWAMNGG QATEQGDCSK FKSNIPHCCK KDPEIVDLLP 120
  121 GTPYNMQIAN CCKGGVLNSW AQDPANAIAS FQVSVGQAGT TNKTVRVPRN FTLKSPGPGY 180
  181 TCGSAKVVRP TKFFSQDGRR TTQAHMTWNV TCTYSQIVAQ RSPTCCVSLS SFYNDTIVNC 240
  241 PTCSCGCQNN KPGSCVEGNS PYLASVVNTH NKDSLTPLVQ CTSHMCPIRV HWHVKVNYKE 300
  301 YWRVKITVTN FNYRMNYSQW NLVTQHPSFD NLTTIFSFNY KSLNPYGVIN DTAMLWGIKY 360
  361 YNDLLMTAGP DGNVQSELLF KKDPKSFTFE KGWAFPRRVY FNGDNCVMPP PDAYPWLPNA 420
  421 STRVMSSILL PFITIWTALT FLMVYA

Type	Start	End	Confidence
Signal Peptide	1	28	0.99
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	423	0.99
Transmembrane Helix	424	445	0.75
Cytoplasmic	446	446	0.82