YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21214009
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	84	0.99
Transmembrane Helix	85	107	0.91
Non-Cytoplasmic	108	121	0.90
Transmembrane Helix	122	142	0.95
Cytoplasmic	143	152	0.82
Transmembrane Helix	153	171	0.91
Non-Cytoplasmic	172	181	0.59
Transmembrane Helix	182	203	0.86
Cytoplasmic	204	211	0.83
Transmembrane Helix	212	233	0.90
Non-Cytoplasmic	234	242	0.84
Transmembrane Helix	243	266	0.86
Cytoplasmic	267	310	0.95
Transmembrane Helix	311	337	0.82
Non-Cytoplasmic	338	355	0.90
Transmembrane Helix	356	380	0.87
Cytoplasmic	381	395	0.91
Transmembrane Helix	396	415	0.95
Non-Cytoplasmic	416	422	0.72
Transmembrane Helix	423	444	0.88
Cytoplasmic	445	463	0.78
Transmembrane Helix	464	482	0.87
Non-Cytoplasmic	483	488	0.89
Transmembrane Helix	489	509	0.93
Cytoplasmic	510	561	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNSGTTTV QLDDVLERSS TLNTLNNIDT VQHHEPRTSF ANNRQQAPAG GSSQSDATVG  60
   61 PRHKLVTFAP DDPENPKNWS KAYKWYCTLV VSLTCFVVAF ASSVISADID GVMEEFNVSE 120
  121 TAALVSISVF VVGFGVGPMV FAPLSEVYGR RIIYGSKLLF AVIFVIPCAV SKNLGTLLAC 180
  181 RAIDGIAFSA PMTLVGGTLA DMWKNEERGV PMAAFSAAPF AGPAIGPLVG GYLSDAAGWR 240
  241 WLYWIQLILS GIIWILITFT VPETYAPTIL AKRARKLRKS TGDPNHVTEQ ELDPRPISEQ 300
  301 LRVFLTRPFQ LLFGELIVLL ISLYMSVLYG LLYMFFIAYP IVYKGGKGYS SGKTGLMFIP 360
  361 VAVGVVLSAC CSPFVNTHYI SLAHFHGGKP PAEVRLIPMM LSCWLIPIGL FIFAWTSYPW 420
  421 LSWAGPAMGG FPVGFGFIFL YNSANNYLVD SYQHQAASAL AAKTFIRSFW GAGVVLFTKQ 480
  481 MYSRLGDQWA SSLIAFLALA CCAIPFLFWK YGARIRARSK YAYAGDETPA DVEKAKQRPA 540
  541 EAGVLADADD LRRAISYVSN P