YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCAM1_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRYDSNPF EEDDVNPFSE QARGKAGGQP SYGGGAFYMP NPRNVPSVSS NSRLSPLPPE  60
   61 PAAFGATVDI PLDSSKDLKN REKELQAREA ELNKREKELK RREEAAARAG IVIEEKNWPP 120
  121 FLPLIHHDIT NEIPSHLQRM QYVAFASFLG LACCLFWNVI AVTSAWVKGE GVKIWLLAII 180
  181 YFISGVPGAY VLWYRPLYNA MRTDSALKFG LFFLVYLFHI LFCVFSAVAP PVVFEGKSLA 240
  241 GILPAIDLIS KNALVGIFYF VGFGLFCVES LLSIWVIQQV YMYFRGSGKA AEMKRDATRG 300
  301 AMRAAF

Type	Start	End	Confidence
Cytoplasmic	1	141	0.93
Transmembrane Helix	142	165	0.88
Non-Cytoplasmic	166	173	0.76
Transmembrane Helix	174	194	0.95
Cytoplasmic	195	208	0.84
Transmembrane Helix	209	233	0.86
Non-Cytoplasmic	234	254	0.86
Transmembrane Helix	255	277	0.91
Cytoplasmic	278	306	0.89