YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27261033, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSTSPR FGSMISAKLA SPPPSLLLPP SPRLQGRRLT PPSCTPGTPA ALPSPGPDKE  60
   61 PEREAAGSGS GSATTPRSPA QLGSSQLHRW SRARAHRSGR RLEWPTIRDR GSGGASSPPT 120
  121 PTRPHPSSDE AASAAAKVAV EEEDGYGVVG RDEAAKSIYM VSDGTGWTAE HSVNAALGQF 180
  181 EHCLVDRGCA VNTHLFNGID DMDRLIEIVK QAAKEGALVL YTLADPSMAE ATKKACELWG 240
  241 VPSNDILRPT IEAIASHIGV APSGIPRSSP SRKGQLTEDY FRRIEAIDFT IKQDDGAQPQ 300
  301 NLNRAHIVLV GVSRTGKTPL SIYLAQKGYK VANVPIVMGV NLPKSLFEID QDKIFGLTIN 360
  361 PVVLQAIRKA RAKTLGFHGQ KSNYAEMEHV RGELDHANQI FAQHPIWPVI EVTGKAIEET 420
  421 AAVVVRIFHD RKQKCAMPRI SKRY

Type	Start	End	Confidence
Signal Peptide	1	36	0.61
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	444	0.99