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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|34901854, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.24
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRRFFPAW VVVVMVVVVV LGSCSAAAAA GDGDALMDVK NAFVEDPGGV LAGWGGGGGN  60
   61 SSAFCSWAGV ECDAAGARVT GLNLSGAGLA GEVPGAALAR LDRLEVVDLS SNRLAGPVPA 120
  121 ALGALGRLTA LLLYSNRLAG ELPPSLGALA ALRVLRVGDN PALSGPIPAA LGVLANLTVL 180
  181 AAASCNLTGA IPRSLGRLAA LTALNLQENS LSGPIPPELG GIAGLEVLSL ADNQLTGVIP 240
  241 PELGRLAALQ KLNLANNTLE GAVPPELGKL GELAYLNLMN NRLSGRVPRE LAALSRARTI 300
  301 DLSGNLLTGE LPAEVGQLPE LSFLALSGNH LTGRIPGDLC GGGGGGAEST SLEHLMLSTN 360
  361 NFSGEIPGGL SRCRALTQLD LANNSLTGVI PAALGELGNL TDLLLNNNTL SGELPPELFN 420
  421 LTELKVLALY HNGLTGRLPD AVGRLVNLEV LFLYENDFSG EIPETIGECS SLQMVDFFGN 480
  481 RFNGSLPASI GKLSELAFLH LRQNELSGRI PPELGDCVNL AVLDLADNAL SGEIPATFGR 540
  541 LRSLEQLMLY NNSLAGDVPD GMFECRNITR VNIAHNRLAG GLLPLCGSAR LLSFDATNNS 600
  601 FSGGIPAQLG RSRSLQRVRF GSNALSGPIP AALGNAAALT MLDASGNALT GGIPDALARC 660
  661 ARLSHIALSG NRLSGPVPAW VGALPELGEL ALSGNELTGP VPVQLSNCSK LIKLSLDGNQ 720
  721 INGTVPSEIG SLVSLNVLNL AGNQLSGEIP ATLAKLINLY ELNLSRNLLS GPIPPDIGQL 780
  781 QELQSLLDLS SNDLSGSIPA SLGSLSKLES LNLSHNALAG AVPPQLAGMS SLVQLDLSSN 840
  841 QLQGRLGSEF SRWPRGAFAG NARLCGHPLV SCGVGGGGRS ALRSATIALV SAAVTLSVVL 900
  901 LVIVLVLIAV RRRRSGEVNC TAFSSSLGGG GNNTNGRQLV VKGSARREFR WEAIMEATAN 960
  961 LSDQFAIGSG GSGTVYRAEL PTGETVAVKR IAHMDSDMLL HDKSFAREVK ILGRVRHRHL1020
 1021 VKLLGFVASH DVGGGGGGGG SMLVYEYMEN GSLYDWLHGI AAGGGGGGDG ERKKRVLSWD1080
 1081 ARLKVAAGLA QGVEYLHHDC VPRVVHRDIK SSNVLLDGDM EAHLGDFGLA KSVADNRKDF1140
 1141 TDSASCFAGS YGYMAPECGY SLKTTEKSDV YSMGIVMMEL VTGLTPTDKA FGGDVDMVRW1200
 1201 VQSRVEAPSP GREQVFDPAL KPLAPREESS MTEVLEVALR CTRTAPGERP TARQVSDLLL1260
 1261 HVSLDYYRAG EHKR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle