YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33669026, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.97
Transmembrane Helix	23	43	0.94
Non-Cytoplasmic	44	53	0.85
Transmembrane Helix	54	74	0.92
Cytoplasmic	75	94	0.86
Transmembrane Helix	95	114	0.96
Non-Cytoplasmic	115	121	0.85
Transmembrane Helix	122	142	0.93
Cytoplasmic	143	150	0.85
Transmembrane Helix	151	173	0.92
Non-Cytoplasmic	174	193	0.90
Transmembrane Helix	194	215	0.93
Cytoplasmic	216	234	0.89
Transmembrane Helix	235	253	0.93
Non-Cytoplasmic	254	269	0.79
Transmembrane Helix	270	290	0.91
Cytoplasmic	291	297	0.80
Transmembrane Helix	298	320	0.88
Non-Cytoplasmic	321	325	0.78
Transmembrane Helix	326	348	0.89
Cytoplasmic	349	365	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTAATTEH PEVVGKLSTL DRYLAVWIGV AMVVGLLVGR WIPGVNTALE KVQIDGISLP  60
   61 IALGLLIMMY PVLAKVRYDR LDTVTGDKKL LAGSLFLNWV LGPALMFALA WLFLPDLPEY 120
  121 RTGLIIVGIA RCIAMVIIWN DLACGDREAA AVLVAINSVF QVIMFAVLGW FYLSVLPGWL 180
  181 GLEQTTIDTS PWQIAKSVLI FLGIPLLAGF LSRFFGERAK GRDWYDTKFI PKISPWALYG 240
  241 LLFTIVVLFS MQGEQITSQP WDVVRIALPL LAYFALMWGG GYILGAAIGL GYERTTTLAF 300
  301 TAAGNNFELA IAVAIATYGA TSGQALAGVV GPLIEVPVLV GLVYVSLALR KRFAVKEVSP 360
  361 APTAT