YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TYDC1_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGVGGGGGG EEWLRPMDAE QLRECGHRMV DFVADYYKSI EAFPVLSQVQ PGYLKEVLPD  60
   61 SAPRQPDTLD SLFDDIQQKI IPGVTHWQSP NYFAYYPSNS STAGFLGEML SAAFNIVGFS 120
  121 WITSPAATEL EVIVLDWFAK MLQLPSQFLS TALGGGVIQG TASEAVLVAL LAARDRALKK 180
  181 HGKHSLEKLV VYASDQTHSA LQKACQIAGI FSENVRVVIA DCNKNYAVAP EAVSEALSID 240
  241 LSSGLIPFFI CATVGTTSSS AVDPLPELGQ IAKSNDMWFH IDAAYAGSAC ICPEYRHHLN 300
  301 GVEEADSFNM NAHKWFLTNF DCSLLWVKDR SFLIQSLSTN PEFLKNKASQ ANSVVDFKDW 360
  361 QIPLGRRFRS LKLWMVLRLY GVDNLQSYIR KHIHLAEHFE QLLLSDSRFE VVTPRTFSLV 420
  421 CFRLVPPTSD HENGRKLNYD MMDGVNSSGK IFLSHTVLSG KFVLRFAVGA PLTEERHVDA 480
  481 AWKLLRDEAT KVLGKMV

Type	Start	End	Confidence
Cytoplasmic	1	104	0.58
Transmembrane Helix	105	122	0.47
Non-Cytoplasmic	123	150	0.82
Transmembrane Helix	151	173	0.55
Cytoplasmic	174	242	0.58
Transmembrane Helix	243	257	0.22
Non-Cytoplasmic	258	497	0.63