YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55587758
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEHLSLLRS PPPPSARHRA HPPQRPASSG GAHTLVNPGY AEPAAGRELP PDMTVVPGDH  60
   61 LLEPEVADGG GAPPQGGCGG GGCDRYEPLP PSLPAAGEQD CCGERVVINI SGLRFETQLK 120
  121 TLCQFPETLL GDPKRRMRYF DPLRNEYFFD RNRPSFDAIL YYYQSGGRIR RPVNVPIDIF 180
  181 SEEIRFYQLG EEAMEKFRED EGFLREEERP LPRRDFQRQV WLLFEYPESS GPARGIAIVS 240
  241 VLVILISIVI FCLETLPEFR DEKDYPASTS QDSFEAAGNS TSGARAGASS FSDPFFVVET 300
  301 LCIIWFSFEL LVRFFACPSK ATFSRNIMNL IDIVAIIPYF ITLGTELAER QGNGQQAMSL 360
  361 AILRVIRLVR VFRIFKLSRH SKGLQILGQT LKASMRELGL LIFFLFIGVI LFSSAVYFAE 420
  421 ADDPTSGFSS IPDAFWWAVV TMTTVGYGDM HPVTIGGKIV GSLCAIAGVL TIALPVPVIV 480
  481 SNFNYFYHRE TEGEEQAQYM HVGSCQHLSS SAEELRKARS NSTLSKSEYM VIEEGGMNHS 540
  541 AFPQTPFKTG NSTATCTTNN NPNSCVNIKK IFTDV

Type	Start	End	Confidence
Cytoplasmic	1	232	0.83
Transmembrane Helix	233	253	0.87
Non-Cytoplasmic	254	294	0.80
Transmembrane Helix	295	317	0.80
Cytoplasmic	318	326	0.81
Transmembrane Helix	327	345	0.81
Non-Cytoplasmic	346	355	0.63
Transmembrane Helix	356	374	0.75
Cytoplasmic	375	397	0.91
Transmembrane Helix	398	419	0.93
Non-Cytoplasmic	420	433	0.79
Transmembrane Helix	434	451	0.73
Cytoplasmic	452	458	0.60
Transmembrane Helix	459	480	0.89
Non-Cytoplasmic	481	575	0.78