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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|215769107, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.83
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVARVLL AAAVFFAAVA AAAAASSSAA AVAALMEFKT KLDDVDGRLS SWDAAGGSGG  60
   61 GDPCGWPGIA CSAAMEVTAV TLHGLNLHGE LSAAVCALPR LAVLNVSKNA LAGALPPGLA 120
  121 ACRALEVLDL STNSLHGGIP PSLCSLPSLR QLFLSENFLS GEIPAAIGNL TALEELEIYS 180
  181 NNLTGGIPTT IAALQRLRII RAGLNDLSGP IPVEISACAS LAVLGLAQNN LAGELPGELS 240
  241 RLKNLTTLIL WQNALSGEIP PELGDIPSLE MLALNDNAFT GGVPRELGAL PSLAKLYIYR 300
  301 NQLDGTIPRE LGDLQSAVEI DLSENKLTGV IPGELGRIPT LRLLYLFENR LQGSIPPELG 360
  361 ELTVIRRIDL SINNLTGTIP MEFQNLTDLE YLQLFDNQIH GVIPPMLGAG SNLSVLDLSD 420
  421 NRLTGSIPPH LCKFQKLIFL SLGSNRLIGN IPPGVKACRT LTQLQLGGNM LTGSLPVELS 480
  481 LLRNLSSLDM NRNRFSGPIP PEIGKFRSIE RLILSENYFV GQIPPGIGNL TKLVAFNISS 540
  541 NQLTGPIPRE LARCTKLQRL DLSKNSLTGV IPQELGTLVN LEQLKLSDNS LNGTVPSSFG 600
  601 GLSRLTELQM GGNRLSGQLP VELGQLTALQ IALNVSYNML SGEIPTQLGN LHMLEFLYLN 660
  661 NNELEGEVPS SFGELSSLLE CNLSYNNLAG PLPSTTLFQH MDSSNFLGNN GLCGIKGKSC 720
  721 SGLSGSAYAS REAAVQKKRL LREKIISISS IVIAFVSLVL IAVVCWSLKS KIPDLVSNEE 780
  781 RKTGFSGPHY FLKERITFQE LMKVTDSFSE SAVIGRGACG TVYKAIMPDG RRVAVKKLKC 840
  841 QGEGSNVDRS FRAEITTLGN VRHRNIVKLY GFCSNQDCNL ILYEYMANGS LGELLHGSKD 900
  901 VCLLDWDTRY RIALGAAEGL RYLHSDCKPK VIHRDIKSNN ILLDEMMEAH VGDFGLAKLI 960
  961 DISNSRTMSA IAGSYGYIAP EYAFTMKVTE KCDIYSFGVV LLELVTGQSP IQPLEQGGDL1020
 1021 VNLVRRMTNS STTNSEIFDS RLNLNSRRVL EEISLVLKIA LFCTSESPLD RPSMREVISM1080
 1081 LMDARASAYD SFSSPASEAP IEDDSSLKH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle