YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33331887
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINTVKRTL LLSVSIVAIV VVLIRLSSDS TPDLHQVLSP GVPMSDSSQQ DHQGRGRGRR  60
   61 GSGLGLSGKS NSEELEIARK LNELTEKLLN EQDVRLKKLE QDRQRLEKQL SELRRPNPEA 120
  121 TLRERLAYMF PYDQNRKFPA YIWQSWKYGL NDANFGPRYK EGEEQWALKN PGFVHELFND 180
  181 DTSNAIVHYL YMHMPEVVKA YELLPHIVLK MDFFRYLILF AKGGVYADVD TLPLQPIPNW 240
  241 IPENVDPSEI GMIIGIQSDP DTPDWRKFFA RRLQFANWVI QAKPGHPILR EVIATITEET 300
  301 LKRAKEGTLD FDAASDFSIM EWTGAGVWTD VIFKYFNDYV LSGIFSKVTW KDFTKLDVPK 360
  361 LVSDVLVLPI TCFSPGIGKM GAHDADHPLA FVKHYSEHLF RQ

Type	Start	End	Confidence
Signal Peptide	1	28	0.93
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	402	0.99