YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hupS
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVTETFYE VIRRQGITRR SFVKFCSLTA TSLGLGPIGA TQIAHALETK PRVPVIWMHG  60
   61 LECTCCSESF IRSAHPLVKD AVLSMISLDY DDTIMAAAGH QADAILEETR KKYKGQYVLA 120
  121 VEGNPPLNED GMFCIDGGRP FVEKLKEMAE DSMAVIAWGS CASWGCVQAA KPNPTNATPI 180
  181 DKVIRNKPVI KVPGCPPIAE VMTGVVSYII TFGRLPELDR QGRPKMFYSQ RIHDKCYRRP 240
  241 HFDAGQFVEE WDDDGARKGY CLYKMGCKGP TTYNACSTVR WNGGVSFPIQ SGHGCIGCSE 300
  301 DAFWDKGSFY DRLTTINQFG IEANADKIGA TVAGVVGTAI AAHAAVTTVR NLSRRKEVPN 360
  361 GNGTSNGKSA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.69
Transmembrane Helix	21	41	0.64
Non-Cytoplasmic	42	370	0.93