YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125556956
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	43	0.91
Non-Cytoplasmic	44	85	0.94
Transmembrane Helix	86	104	0.90
Cytoplasmic	105	110	0.75
Transmembrane Helix	111	130	0.90
Non-Cytoplasmic	131	135	0.79
Transmembrane Helix	136	158	0.87
Cytoplasmic	159	167	0.88
Transmembrane Helix	168	190	0.86
Non-Cytoplasmic	191	200	0.80
Transmembrane Helix	201	222	0.91
Cytoplasmic	223	284	0.96
Transmembrane Helix	285	307	0.89
Non-Cytoplasmic	308	320	0.87
Transmembrane Helix	321	343	0.91
Cytoplasmic	344	350	0.92
Transmembrane Helix	351	374	0.82
Non-Cytoplasmic	375	385	0.77
Transmembrane Helix	386	407	0.92
Cytoplasmic	408	426	0.81
Transmembrane Helix	427	446	0.92
Non-Cytoplasmic	447	453	0.71
Transmembrane Helix	454	475	0.92
Cytoplasmic	476	518	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGAVVSTG AGKDYPGKLT LFVFFTCVVA ATGGLIFGYD IGISGGVTSM DPFLRKFFPE  60
   61 VYRKKQMADK NNQYCKYDNQ LLQTFTSSLY LAALVSSFFA ATVTRVLGRK WSMFAGGLTF 120
  121 LIGAALNGAA ENVAMLIVGR ILLGVGVGFA NQSVPVYLSE MAPARLRGML NIGFQLMITI 180
  181 GILAAELINY GTAKIKAGWG WRVSLALAAV PAAIITLGSL FLPDTPNSLI DRGHPEAAER 240
  241 MLRRIRGSDV DVSEEYADLV AASEESKLVQ HPWRNILRRK YRAQLTMAIC IPFFQQLTGI 300
  301 NVIMFYAPVL FDTLGFKSDA SLMSAVITGL VNVFATLVSI FTVDRLGRRK LFLQGGAQMV 360
  361 VCQVVVGTLI AVKFGTSGIG DIPKGYAAVV VLFICMYVAG FAWSWGPLGW LVPSEIFPLE 420
  421 IRPAGQSINV SVNMLFTFVI AQAFLTMLCH MKFGLFYFFA GWVVIMTVFI ALFLPETKNV 480
  481 PIEEMVLVWK SHWFWRRFIG DHDVHVGANH VSNNKLQP