YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50508912, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAWNTSILL PPPPPLLSRA AVATPALNPY PLRLHRRHPQ KPLCLPSESY PADTDADASS  60
   61 ASLDSRPRRI ALFVEPSPFA YVSGYKNRFL NFIKYLREMG DEVIVITTHE GVPQEFYGAK 120
  121 LIGSWSFPCP WYQKVPLSLA LSPRIIGEVA RFKPDIIHAS SPGIMVFGAL IIAKLLCVPL 180
  181 VMSYHTHVPI YIPRYTFSWL VKPMWLIIKF LHRAADLTLV PSVAIGKDLQ AARVTAANKI 240
  241 RLWNKGVDSE SFHPRFRNDE MRARLTNGEP EKPLILYVGR LGVEKSLDFL KRVMDRLPGS 300
  301 RIAFVGDGPF RAELQLMFTG MPAVFTGTLQ GEELSQAYAS GDVFVMPSES ETLGFVVLEA 360
  361 MSSGVPVVAA RAGGIPDIIP EDQEGKTSFL YTPGDVDDCV SKIERLLTCE ELRETMRKAA 420
  421 RKEMEKFDWR AATRKIRNEQ YSAAIWFWRK KRAQLLRPIQ WVSRRLFRPT PAPSTMNQS

Type	Start	End	Confidence
Signal Peptide	1	20	0.56
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	479	0.81