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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50928147, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPPRLLFL LVMLLVVAAP GAPVFGANAP PEVKAEIDAL LMFRSGLRDP YAAMSGWNAS  60
   61 SPSAPCSWRG VACAAGTGRV VELALPKLRL SGAISPALSS LTFDVSGNLL SGPVPVSFPP 120
  121 SLKYLELSSN AFSGTIPANV SASATSLQFL NLAVNRLRGT VPASLGTLQD LHYLWLDGNL 180
  181 LEGTIPSALS NCSALLHLSL QGNALRGILP PAVAAIPSLQ ILSVSRNRLT GAIPAAAFGG 240
  241 VGNSSLRIVQ VGGNAFSQVD VPVSLGKDLQ VVDLRANKLA GPFPSWLAGA GGLTVLDLSG 300
  301 NAFTGEVPPA VGQLTALQEL RLGGNAFTGT VPAEIGRCGA LQVLDLEDNR FSGEVPAALG 360
  361 GLRRLREVYL GGNSFSGQIP ASLGNLSWLE ALSTPGNRLT GDLPSELFVL GNLTFLDLSD 420
  421 NKLAGEIPPS IGNLAALQSL NLSGNSFSGR IPSNIGNLLN LRVLDLSGQK NLSGNLPAEL 480
  481 FGLPQLQYVS LAGNSFSGDV PEGFSSLWSL RHLNLSVNSF TGSMPATYGY LPSLQVLSAS 540
  541 HNRICGELPV ELANCSNLTV LDLRSNQLTG PIPGDFARLG ELEELDLSHN QLSRKIPPEI 600
  601 SNCSSLVTLK LDDNHLGGEI PASLSNLSKL QTLDLSSNNL TGSIPASLAQ IPGMLSLNVS 660
  661 QNELSGEIPA MLGSRFGTPS VFASNPNLCG PPLENECSAY RQHRRRQRLQ RLALLIGVVA 720
  721 ATVLLLVLFC CCCVYSLLRW RRRFIEKRDG VKKRRRSPGR GSGSSGTSTD SVSQPKLIMF 780
  781 NSRITYADTV EATRQFDEEN VLSRGRHGLV FKACYNDGTV LAILRLPSTS SDGAVVIEEG 840
  841 SFRKEAESLG KVKHRNLTVL RGYYAGPPPD VRLLVYDYMP NGNLATLLQE ASHQDGHILN 900
  901 WPMRHLIALG VSRGLAFLHQ SGVVHGDVKP QNILFDADFE PHLSDFGLEP MVVTAGAAAA 960
  961 AAAASTSATT TVGSLGYVAP DAAAAGQATR EGDVYSFGIV LLELLTGRRP GMFAGEDEDI1020
 1021 VKWVKRQLQR GAVAELLEPG LLELDPESSE WEEFLLGIKV GLLCTAPDPL DRPAMGDVVF1080
 1081 MLEGCRVGPD IPSSADPTSQ PSPA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle