YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14198340
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRCLSALSDG LGALRPRAPA ARGGVSRASP LLLLLLVPSP RLAAAAPRRQ LGDWERSRLG  60
   61 YAAPPAGRSS AWRCSPGVAA AAGALPQYHG PAPALVSCRR ELSLSAGSLQ LERKRRDFTS 120
  121 SGSRKLYFDT HALVCLLEDN GFATQQAEII VSALVKILEA NMDIVYKDMV TKMQQEITFQ 180
  181 QVMSQIANVK KDMIILEKSE FSALRAENEK IKLELHQLKQ QVMDEVIKVR TDTKLDFNLE 240
  241 KSRVKELYSL NEKKLLELRT EIVALHAQQD WALTQTDRKI ETEVAGLKTM LESHKLDNIK 300
  301 YLAGSIFTCL TVALGFYRLW I

Type	Start	End	Confidence
Non-Cytoplasmic	1	298	0.53
Transmembrane Helix	299	320	0.72
Cytoplasmic	321	321	0.34