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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: siz-PC
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIICISGFII GESFPQKSLE RSGSTQYELA GAQQPGSANA STCTDSGSVG GYVYLQNHYA  60
   61 PGAHSSSAAI NYPAQQHPQM VYQIQQYPTC HQQQQQQHLQ QQQHLHQTGA GHYMQVTATG 120
  121 GGQYHHHHML HGHGHHAHHH GGAVVIAGSG VGTGLGSGAT SVIMQHQQQQ QQQQNMHKKN 180
  181 SIRNGGDVLK RTRAQSAYEL SQDLLEKQIE LLERKYGGVR ARNAAVTIQR AFRHYMMVKK 240
  241 FASITAMAKA EKRLSRRMVV TASSLGLAEE GASSSSAYGS ATESQLTEQQ QQQQAQQQQQ 300
  301 PRVTIMAGPA GAASPGLSRT PPTRSLSMRE RRQLDCSPIP RSQSGASPAS ISSSTVSTSA 360
  361 LASHPHVNLL HAAEPHYYNA QALPQGAAYY TSYHGSPHDL SYASSADTSL NASWVNTSGH 420
  421 SPHTPYYSAA QIYMRPKGGS TTPTPSCSGS TGSGSGGSGS GSSKKVPPEV PKRTSSITAQ 480
  481 QQTQLLLLQR QTPPPPSLLR TNGLCKTAEN GSLTSVQSSG SDSSVTSAER NLNSDLGSDR 540
  541 SNSPHTWKRG TALNSSQQFS THSADSAGAV SGGGVGVAGG AGVYAAQMQA AVAAATAAGG 600
  601 MPPADDHAIS SHTSAAQYEQ HEQQQHEQQQ LQAAAAAAGV AQNYKMSETI RKRQYRVGLN 660
  661 LFNKKPEKGI TYLIRRGFLE NTPQGVARFL ITRKGLSRQM IGEYLGNLQN QFNMAVLSCF 720
  721 AMELDLSGRQ VDVALRKFQA YFRMPGEAQK IERLMEIFSQ RYCECNADIV GRLRSSDTIF 780
  781 VLAFAIIMLN TDLHTPNLKP ERRMRVEDFI KNLRGIDDCH DIDKDMLMGI YDRVKSDEFK 840
  841 PGSDHVTQVM KVQATIVGKK PNLALPHRRL VCYCRLYEIP DVNKKERPGV HQREVFLFND 900
  901 LLVITKIFSK KKTSVTYTFR NSFPLCGTVV TLLDMPNYPF CIQLSQKVDG KILITFNARN 960
  961 EHDRCKFAED LKESISEMDE MESLRIEAEL ERQKSARNRA PGNAENRDSG VADVEVCPCP1020
 1021 YQQGSQASGE QAPNSADNSQ QLKRSALSNS LLDMHEQFGN EKPQRRGSVG SLDSGMSISF1080
 1081 QSTTTSSASR ENAAAIAAAA NAAAAAKMRF NMPPTAAIAT PSNVYAAPGM QAYTHANFVQ1140
 1141 QSQAAYMLQQ QQMLQQQAQM QAQAQAQAQA QAQAQAQAQA QAQAQPLTGR IPGRERKASR1200
 1201 TDENGRSTEV 

YRC Informatics Platform - Version 3.0
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