YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218194960, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGLLSKLRS LDAYPKVNED FYSRTLSGGI ITLASSVVML LLFVSELRLY LHAVTETTLR  60
   61 VDTSRGETLR INFDVTFPAL QCSIISLDAM DISGQEHLDV KHDIFKQRID VHGNVIATKQ 120
  121 DAVGGMKVEQ PLQRHGGRLE HNETYCGSCY GAEESDEQCC NSCEDVREAY RKKGWGVSNP 180
  181 DLIDQCKREG FLQSIKDEEG EGCNIYGFLE VNKVAGNFHF APGKSFQKAN VHVHDLLPFQ 240
  241 KDSFNVSHKI NKLSFGQRFP GVVNPLDGAQ WMQHSSYGMY QYFIKVVPTV YTDINEHIIL 300
  301 SNQFSVTEHF RSSESGRIQA VPGVFFFYDL SPIKVTFTEQ HVSFLHFLTN VCAIVGGVFT 360
  361 VSGIIDSFVY HGQRAIKKKM EIGKFN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.86
Transmembrane Helix	21	43	0.86
Non-Cytoplasmic	44	345	0.92
Transmembrane Helix	346	370	0.84
Cytoplasmic	371	386	0.87