YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33572739, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTYIVKRLL GMIPTLLLVA VVVFLFVHML PGDPARLAAG QEADQETVEL VRQELGLDLP  60
   61 LPQQFVRYFG HMLQGDLGTS LRTKRPVSTE IADRFMPTLW LTLASMIWSV VFGMAIGVVS 120
  121 AVWRNRWPDR LGMTLAVSGI SFPAFALGMM LMQVFSVNLG WLPTVGASSW KHYILPSLTL 180
  181 GAAVAAVMAR FTRASFVEVI QEDFVRTARA KGLSERVVVT KHALRNALIP VVTMMGLQFG 240
  241 FLLGGSIVVE TVFNWPGLGR LLVDAVTQRD YPVIQGLVLL FSLEFILINL IVDVLYGVIN 300
  301 PSIRYK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	100	0.98
Transmembrane Helix	101	123	0.91
Cytoplasmic	124	130	0.92
Transmembrane Helix	131	155	0.85
Non-Cytoplasmic	156	171	0.87
Transmembrane Helix	172	192	0.91
Cytoplasmic	193	227	0.95
Transmembrane Helix	228	249	0.88
Non-Cytoplasmic	250	276	0.86
Transmembrane Helix	277	299	0.88
Cytoplasmic	300	306	0.91