YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33601999, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.80
Transmembrane Helix	14	35	0.83
Non-Cytoplasmic	36	48	0.64
Transmembrane Helix	49	69	0.93
Cytoplasmic	70	75	0.54
Transmembrane Helix	76	95	0.70
Non-Cytoplasmic	96	100	0.80
Transmembrane Helix	101	124	0.90
Cytoplasmic	125	133	0.85
Transmembrane Helix	134	156	0.88
Non-Cytoplasmic	157	169	0.82
Transmembrane Helix	170	188	0.89
Cytoplasmic	189	193	0.73
Transmembrane Helix	194	213	0.91
Non-Cytoplasmic	214	234	0.86
Transmembrane Helix	235	259	0.83
Cytoplasmic	260	279	0.88
Transmembrane Helix	280	302	0.70
Non-Cytoplasmic	303	310	0.68
Transmembrane Helix	311	333	0.82
Cytoplasmic	334	338	0.53
Transmembrane Helix	339	360	0.69
Non-Cytoplasmic	361	376	0.83
Transmembrane Helix	377	400	0.86
Cytoplasmic	401	409	0.83
Transmembrane Helix	410	428	0.90
Non-Cytoplasmic	429	430	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEKLFQLRD HATTVRTEIV AGLTTFLTMS YIIFLNPDIL SSTGMDRNAV FVATCLAAAL  60
   61 GSLIMALVAN WPIGMAPGMG LNAFFAFTVV KTMGYTWEQA LGAVFISGVI FLFLTISGIR 120
  121 AWLIRGIPHS LRSAIAAGIG LFLAIIALSN ANIVVAHPAT KVTLGDLREP GPLFAILGFF 180
  181 IIAALDALRV RGAILIGILS VTVLSMLLGY NQFNGIFSSP PSLAPTFMQL DILGALHTGF 240
  241 VHVILVFVLV EVFDATGTLM GIAKRAGLVP EDRPNRLGRA LFADSTAIVA GSMLGTSSTT 300
  301 AYVESASGVQ AGGRTGLTAL VVALLFLAAL FIAPLAGSVP AYATAPALLY VAGLMMRELI 360
  361 DIDWNDVSEA TPAALTALVM PFTYSIANGL AFGFISYVVL KTCTGRIREV HPATWLVAIL 420
  421 FIVRYAFFPE