YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33572227, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALLALSRG IDALNLRVGR AVTWVTLLVV LVSAGNAVVR KVFHSSSNAW LELQWYMFGA  60
   61 MFLLTAGYTL LKNEHVRVDI LSSRLPRHKQ IWIEIFGVVF FLLPACTLIM VLSWPVFMDS 120
  121 YLSGEQSSNS GGLIRWPVKL LIPVGFALLV LAGLSHLIKC IGFLRGQCPD PTAREGSKSA 180
  181 EELLAEEIAR EALEREASVQ EQRNNHEGR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	39	0.95
Non-Cytoplasmic	40	52	0.82
Transmembrane Helix	53	71	0.96
Cytoplasmic	72	91	0.93
Transmembrane Helix	92	114	0.95
Non-Cytoplasmic	115	137	0.89
Transmembrane Helix	138	158	0.90
Cytoplasmic	159	209	0.97