YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33603244, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFMYTEFRSQ LLAGAGTSAA GQSARMAVLA GDGATGVQVS CVVPGLNEAA NLRVLVPALR  60
   61 ACLEQWCASW EIIVVDDGST DDTAELMAQW SAVEGIRYVQ LSRNFGKEAA LTAGLEAADG 120
  121 DAVICLDADM QHPPELIGDM LAAWRNGAEM VYAVRRQRDD EPWFKRVGAR AFYRLLSTAR 180
  181 GVEVPPHAGD FRLMDRRVVE ALVALPERTR FMKGLYAWVG FKSQAVPYTP QARRHGASHF 240
  241 SAWKLFRLAC DGLTAFTTWP LRLVSLIGVL FALLSLSYGG YLVADYLISG NAVSGWTTIV 300
  301 TALLFFAGIN LISLGVVGEY VARIFDEVKG RPLFIARQRR GRAKRAAKAR SQ

Type	Start	End	Confidence
Cytoplasmic	1	262	0.54
Transmembrane Helix	263	284	0.86
Non-Cytoplasmic	285	294	0.57
Transmembrane Helix	295	321	0.78
Cytoplasmic	322	352	0.67