YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33566456
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.94
Transmembrane Helix	38	56	0.96
Non-Cytoplasmic	57	62	0.89
Transmembrane Helix	63	83	0.93
Cytoplasmic	84	97	0.89
Transmembrane Helix	98	118	0.95
Non-Cytoplasmic	119	125	0.83
Transmembrane Helix	126	147	0.94
Cytoplasmic	148	156	0.75
Transmembrane Helix	157	179	0.91
Non-Cytoplasmic	180	187	0.85
Transmembrane Helix	188	211	0.90
Cytoplasmic	212	218	0.88
Transmembrane Helix	219	241	0.90
Non-Cytoplasmic	242	250	0.76
Transmembrane Helix	251	272	0.92
Cytoplasmic	273	292	0.81
Transmembrane Helix	293	316	0.75
Non-Cytoplasmic	317	352	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFTGPPPAR QCRRAPAPAG HASRNHHAMQ AIARLSRFVG NTFAIWVLLF AALAYYSPEH  60
   61 FKWLGQYIVP LLGLIMFGMG LTLSKDDFRE VLHRPRDVLI GVLGQFIIMP SLAWLLTAVL 120
  121 DLPPEVAVGV ILVGCCPGGT ASNVMTFLAR GDVALSVAIT SVTTLLAPIV TPALIYLLAS 180
  181 QWIEVSAAAM FWSIVQVVIL PIVLGVLAQY LLREKVKVCV DALPLVSVAA IVAIVAAVVA 240
  241 GNQARIATSG LMIFAVVVLH NGLGLLIGYL LGRACGLGVA KRKTLSIEVG MQNSGLGVAL 300
  301 ATAHFSPLAA VPSAIFSVWH NISGPLAATL LRRFKDDEAD APAPATSAAA AR