YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1001341, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQTQPGIED FLLRQLRHPQ EEEEEEDYFD YFYDEPGSEP GTLSIEPDAP PSRIVLVDYS  60
   61 PSHAVRKSDI SPNALRPYLG TNTVSWMDIE GLGSEEVLKE VGEIFKLHPL LLEDIVNVPQ 120
  121 RAKVEDYNDH VMVIAHRVRP NREEDGFESE QVSFVLGKRY LLTFQEGHII DCFNPLRERI 180
  181 RTNQGKVCQQ GADYLCYLLI DMLIDEYFPL LEDYEERIEA LEDTIIRNPN SSLMEEIYHI 240
  241 RRELLALRRL IWPLRHVMNV LLRDTTNSIV TADVRIYFRD CYDHIIQVLD IIEAYRELAS 300
  301 SLMEVYMTAM SNKMNEVMKF LTVISTIFIP LTFIAGVYGM NFKEMPELNS RWGYYITWIV 360
  361 MLLIAGGSLY FFWRKGWLSP SYDLGEK

Type	Start	End	Confidence
Cytoplasmic	1	316	0.85
Transmembrane Helix	317	339	0.89
Non-Cytoplasmic	340	353	0.74
Transmembrane Helix	354	373	0.96
Cytoplasmic	374	387	0.82