YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7445979
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDLTPLWI SLKTAGLATV VTFILGIAAA YGMLGDRQPG KSLVEAVFIA PLILPPTVVG  60
   61 FLLLLLFGKN GPLGKILAQF DVTIVFTWYA AVITATVVSF PLMYKTTLGA FEQVDRHLLQ 120
  121 VAQTLGASRG EVFRRILLPL SLPGILAGTT LAFARSLGEF GATLMVAGNI PGQTQTIPMA 180
  181 IYFAVEAGAM GEAWLWVGII LVISLAGIMA ANIWQRRYED KIHNPQPQEH RLTVLFQNNG 240
  241 WENSSSHYPK LGEVEPGIQV NIQKQLAQFS LDVTFTTQGE TVGLLGASGS GKTMTLRCIA 300
  301 GIETPTQGRI ILNGRTLFDS QRNINVPSHE RKVGLVLQNY ALFPHLTVAQ NIAFGLRHLS 360
  361 PQRRSLRVEE QLTLVNLEKM GDRYPHQLSG GQQQRVALAR ALAPEPNVLL LDEPFSALDT 420
  421 HLRYELEKQL LKILSGYKGF TLFVSHNLEE AYRICQKLLV LSQGKLVATG DKQAIFDRPG 480
  481 SVTIAQLTGC KNYSPIQVID RHTVRALDWQ CTLQTTEPVS SDQTHIGIRA HQIRFLDAGD 540
  541 HHQSPVNTFP GWVVWTSETP HRMTVYLKLG IPPVDTDDYH LQAEVFKEKW QILRHCPQPW 600
  601 SIHLEPDRLM LLTPD

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.60
Transmembrane Helix	14	35	0.90
Cytoplasmic	36	45	0.59
Transmembrane Helix	46	67	0.94
Non-Cytoplasmic	68	83	0.58
Transmembrane Helix	84	104	0.86
Cytoplasmic	105	135	0.65
Transmembrane Helix	136	157	0.85
Non-Cytoplasmic	158	192	0.56
Transmembrane Helix	193	214	0.93
Cytoplasmic	215	340	0.73
Transmembrane Helix	341	356	0.32
Non-Cytoplasmic	357	615	0.59