YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1006592, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNKPQFRQS NLVSHFNYFN SPESIPGTLN LSPNAPPPRI ILIDYNKNQA TKIELKNPLD  60
   61 CEAYVDTESV SWINIDGLGN HTTWEQLGEV FKLHPVALED IVNVPQRPKV VEYENHLIFI 120
  121 SRMVTLDQSS QTFISEQISF ILGKHYLLTI QEEPKYDCLF SVRERIRTKK GAIRQKNADY 180
  181 LFYALIDAII DGFFPVMEVY GELVQSLQSE IISCPTNKSL AKIHQLQQDL LIMRRAIWPQ 240
  241 RDAINSLLRD GSDLISDEVR VFLRDCYDHT IQILDMIETY RDLASNLTDI YLSSVSNRMN 300
  301 EIMKTLTVIS SIFIPLTFIA GIYGMNFNPD KSPWNMPELN WYWGYPVIWM VMLTVGGMML 360
  361 YFFWRKGWFR NLNDVEKGNR

Type	Start	End	Confidence
Cytoplasmic	1	304	0.98
Transmembrane Helix	305	325	0.93
Non-Cytoplasmic	326	341	0.94
Transmembrane Helix	342	364	0.91
Cytoplasmic	365	380	0.97