YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7436358
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.95
Transmembrane Helix	78	99	0.91
Non-Cytoplasmic	100	107	0.84
Transmembrane Helix	108	129	0.86
Cytoplasmic	130	273	0.99
Transmembrane Helix	274	296	0.91
Non-Cytoplasmic	297	308	0.88
Transmembrane Helix	309	331	0.89
Cytoplasmic	332	736	0.98
Transmembrane Helix	737	756	0.86
Non-Cytoplasmic	757	765	0.63
Transmembrane Helix	766	786	0.65
Cytoplasmic	787	809	0.71
Transmembrane Helix	810	830	0.92
Non-Cytoplasmic	831	847	0.71
Transmembrane Helix	848	868	0.88
Cytoplasmic	869	876	0.70
Transmembrane Helix	877	900	0.87
Non-Cytoplasmic	901	910	0.70
Transmembrane Helix	911	931	0.89
Cytoplasmic	932	945	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKACCYFFIS MPPSASFQGQ PLITWHTLSA DQVVSDLHGD RQQGLSQQQV AENLQVYGKN  60
   61 ELIETGGRTS WNILVDQFTN IMLLLLIAVA VISAAIDIYQ AQQLGKFIFP KDAVAIFTVV 120
  121 LLNGILGYVQ ERGAEKALAA LKDLSTSRVR VIREGKTTEV ESTELVPGDL ILLEAGVKVP 180
  181 ADGRILEGAN LQIREAALTG EAEAVMKQGD VLLPADSALG DRLNLVYSGT EVVQGRGTVI 240
  241 VTATGMKTEL GKIASALQSV EPEPTPLQKR MTQLGNVLVS GSLILVAIVV VGGTLFKPDL 300
  301 FMQLVEVSLS MAVAVVPEGL PAVITVTLAL GTQRMAKRNA LIRQLSAVET LGSVTTICSD 360
  361 KTGTLTQNKM VVQSIISDRH RLVVTGEGYN PVGEFQAGEG EDLKIENIPE IEKLLMACIL 420
  421 CNDAILQKEN GQWAILGDPT EGALLALAGK ANIFKHEQEQ YFPRITEFPF SSERKRMSVI 480
  481 VQDGQGKINT PDSYVMFVKG SPELILERCT HIQVGSEILP ISKEKRSYIL EKNNDLAGRG 540
  541 LRVLGFASKV WTTLPANTTD DIAEQELTWL GLVGMLDAPR PEVRDAVAKC RAAGIRPVMI 600
  601 TGDHPLTAQA IALDLGIAEP GARVVTSRDL DNCSEKELAE IVHTVSVYAR VSPEHKLKIV 660
  661 QTLRKQHEVV AMTGDGVNDA PALKQADIGV AMGITGTDVS KEASDMILLD DNFATIVSAV 720
  721 EEGRVVYTNI RRFIRYILGS NIGEVLTIAA APLMGLGGVP LSPLQILWMN LVTDGVPALA 780
  781 LAVEPGKATV MQQSPKDPQE SIFARGLGSY MVRQGLILAI VTIVLMVWAY NYTPNHLEGG 840
  841 LSPNRWKTMV FTTLCLAQMG HALAIRSLTS LTVEMNLFSN PFLLVAVVVT SLLQLLLIYV 900
  901 EPLRAFFGTH YLPANELWVC VGFSALIFIW IELEKVSVRL YSSFK