YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1652477, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVTTTVRL NPDREELQKL VRAQIETLLE TSQFDAAKTI LTPVQPADIA DVIESLPSRL  60
   61 QVLAFRLLSK NEAIDVYEHL APPVQESLLE DFKHPEVLEI FNQMSPDDRV RLLDELPAKV 120
  121 VRQLFKHLSN EERKATSLLL GYKPETAGRI MTTEYVSLKE DYTASQALDH IRHIATSFET 180
  181 IYVLYVTNES RRLTGTLSLR NLVMAKPEEY IGQIMVPDVV SVHTNTDQEE VARTIQHYDF 240
  241 LAVPVVDSEQ RLVGIVTVDD VIDILEEEAT EDIYTAGGVQ SQGDDYFKSS LMTVARKRVV 300
  301 WLFILLVTNT LTSQVIHSQE DVLQKTIALA AFIPLLIDAG GNVGAQSSTV VIRGLNTEDV 360
  361 RLTQVLPVIA REGGAGALLG LMLGIVVTVW AYFLQGDWLV AITVGSSLFI ISLLAAFAGG 420
  421 GLPFLFKSMK LDPALMSAPF ITTAVDVLGV AIYLLIARSL LGI

Type	Start	End	Confidence
Cytoplasmic	1	298	0.81
Transmembrane Helix	299	317	0.75
Non-Cytoplasmic	318	326	0.75
Transmembrane Helix	327	352	0.63
Cytoplasmic	353	372	0.74
Transmembrane Helix	373	394	0.91
Non-Cytoplasmic	395	400	0.70
Transmembrane Helix	401	426	0.86
Cytoplasmic	427	434	0.76
Transmembrane Helix	435	457	0.89
Non-Cytoplasmic	458	463	0.69