YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1652235, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLGSSSQEN LLNLIDRQGR RLRQELMAGA ITLAGLFVVG TAWYRYVEDW TWLDAFYMTT  60
   61 ITLATVGFGE THPLSPASRL FTILLILMGL LTIGYMVNRF TEAFIQGYFQ DSLRRRQEQK 120
  121 VIERLADHYI LCGYGRTGQQ IAFEFAVENI PFVVIDASPE VIIQAKLRDY AVLQGDATLD 180
  181 EILLAAHIER AICIVSALSS DAENLYTVLS AKTLNPKIRA IARASSEEAV QKLKRAGADE 240
  241 VVSPYITGGK RLAAAALRPQ VVSFVDGILT GADRSFYMEE FRIGAEDCPY IGQTLREAQL 300
  301 RAQSGALILA IRRQDRKLIV GPMGDTHLLD ADSLICLGTV EQLRALNQLL CPLNPARVRL 360
  361 PKNHR

Type	Start	End	Confidence
Cytoplasmic	1	25	0.96
Transmembrane Helix	26	44	0.96
Non-Cytoplasmic	45	52	0.71
Transmembrane Helix	53	69	0.83
Cytoplasmic	70	79	0.60
Transmembrane Helix	80	97	0.96
Non-Cytoplasmic	98	365	0.86