YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1652037, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	65	0.59
Transmembrane Helix	66	89	0.86
Cytoplasmic	90	95	0.57
Transmembrane Helix	96	117	0.89
Non-Cytoplasmic	118	139	0.57
Transmembrane Helix	140	163	0.82
Cytoplasmic	164	166	0.60
Transmembrane Helix	167	187	0.74
Non-Cytoplasmic	188	190	0.62
Transmembrane Helix	191	210	0.70
Cytoplasmic	211	240	0.90
Transmembrane Helix	241	263	0.87
Non-Cytoplasmic	264	277	0.60
Transmembrane Helix	278	299	0.78
Cytoplasmic	300	307	0.88
Transmembrane Helix	308	331	0.88
Non-Cytoplasmic	332	344	0.79
Transmembrane Helix	345	364	0.92
Cytoplasmic	365	371	0.78
Transmembrane Helix	372	392	0.86
Non-Cytoplasmic	393	397	0.84
Transmembrane Helix	398	420	0.88
Cytoplasmic	421	433	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCSIVTAIF KPKKPSCLPP CRNQILAMAT PNRPLINFSV RSSGFTFGPY KRQVRFFHLG  60
   61 LLRANMMTWL TIPFLILGLG ILVAGAEILV KGASRIALMA GLSPLIIGLT IVAYGTSMPE 120
  121 MVVSLQAAIA GQADISIGNV VGSNIFNVLL ILGVCSIITP LIVAQQLIRL DIPILIGVSG 180
  181 LLLMFGWDGQ ISRVDGVILA SGAILYTTFL IRQSKKENNP DVTEEYLKEF GEPVPKTGKQ 240
  241 IFIQIAYVVG GVALLVLGSS LLVKSSVAIA KSLGISELVI GLTLIAAGTS LPELATSVVA 300
  301 SYRGERDIAV GNVVGSNIFN ILAVLGFAAI FSPNGIQVSN SAFNFDIPVM FAVALVCLPV 360
  361 FITGRLIDRW EGFLFLFYYI AYTAYLVLDA THNQNLHIFN NVILFVVIPA TAIALGLSLI 420
  421 PDLVRGKKND TGI