YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25331762
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.92
Transmembrane Helix	53	72	0.91
Non-Cytoplasmic	73	80	0.76
Transmembrane Helix	81	104	0.83
Cytoplasmic	105	123	0.79
Transmembrane Helix	124	146	0.81
Non-Cytoplasmic	147	149	0.47
Transmembrane Helix	150	169	0.82
Cytoplasmic	170	177	0.64
Transmembrane Helix	178	196	0.87
Non-Cytoplasmic	197	202	0.61
Transmembrane Helix	203	223	0.76
Cytoplasmic	224	243	0.81
Transmembrane Helix	244	264	0.89
Non-Cytoplasmic	265	268	0.67
Transmembrane Helix	269	290	0.76
Cytoplasmic	291	301	0.87
Transmembrane Helix	302	322	0.90
Non-Cytoplasmic	323	328	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRARRSQVK PRRMTAAQSP PGVLPDAAAT NWVDRHAPQR LRPWLKLGRF DRPVGIWLLM  60
   61 LPGWQGIALA AAEQGRWPNP LLLLAVFVGA ALMRAAGCAF NDIVDRDFDA QVARTAMRPI 120
  121 PAGLISVKQA WLFVVGCCGV SFLILICLGW TAILLGVLSL ALVAAYPFMK RITWWPQAWL 180
  181 GLTFNWGALL GYAAATGHLS WSAALLYASG IFWTLGYDTI YAIQDIEDDA LAGIKSSTRR 240
  241 LGQHVQIGVA GFYLVSFILL VIAGWMGDIG PLFLPLAALF ALHLSRQAAA VRIEDGPGAL 300
  301 KLFKSNALAG LLVFAGLVAG LWKPGVSF