YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13423196, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAASHDAHP HDEHGDAHEA AHGTLKDYVI GFVLAVILTA IPFWLVMGDV LPSAQMTAVA  60
   61 VMGLAVIQVV VHMIYFLHMN TRSEGGWTML ALIFTLILVV ITLAGSLWVM HNLNTHMMPE 120
  121 MMPDMRQAP

Type	Start	End	Confidence
Cytoplasmic	1	27	0.88
Transmembrane Helix	28	47	0.95
Non-Cytoplasmic	48	55	0.72
Transmembrane Helix	56	76	0.95
Cytoplasmic	77	86	0.76
Transmembrane Helix	87	110	0.92
Non-Cytoplasmic	111	129	0.87